Pei Wang

Appointments and Affiliations
 
 
Fred Hutchinson Cancer Research Center
Public Health Sciences Division
Cancer Prevention
Assistant Member, Appointed: 2005
 Professional Headshot of Pei Wang

Mailing Address

1100 Fairview Ave. N., M2-B500
P.O. Box 19024
Seattle, Washington 98109
United States

Contact

Phone: (206) 667-4175
Fax: (206) 667-5977
pwang@fhcrc.org
http://peiwang.fhcrc.org/

Degrees

Ph.D., Stanford University, 2004.
B.S., Peking University, Mathematics, 2000.

Research Interests

I am interested in various fields of bioinformatics, including modeling large-scale proteomics data in biomarker discovery studies, analyzing CGH array/microarray with statistical methods, and studying biology pathway networks based on multiple types of data. I am also collaborating with scientists in Fred Hutchinson on a range of epidemiology studies.

Languages

(Reading, Writing, Speaking)

Chinese, Mandarin: (Fluent, Fluent, Fluent)
English: (Fluent, Fluent, Fluent)

Memberships

American Statistical Association

Honors and Awards

2000-2004, Stanford Graduate Fellowship, Stanford University

Previous Positions

2004-2005, Postdoctoral Fellow, Fred Hutchinson Cancer Research Center, Public Health Sciences Division, Biostatistics

 

Recent Publications

2013
Lohavanichbutr, P, Méndez E, Holsinger CF, Rue TC, Zhang Y, Houck J, Upton MP, Futran N, Schwartz SM, Wang P et al..  2013.  A 13-Gene Signature Prognostic of HPV-Negative OSCC: Discovery and External Validation.. Clinical cancer research : an official journal of the American Association for Cancer Research. 19(5):1197-203. Abstract
Xu, C, Wang P, Liu Y, Zhang Y, Fan W, Upton MP, Lohavanichbutr P, Houck JR, Doody DR, Futran ND et al..  2013.  Integrative genomics in combination with RNA interference identifies prognostic and functionally relevant gene targets for oral squamous cell carcinoma.. PLoS genetics. 9(1):e1003169. Abstract
2012
Yan, D, Wang P, Knudsen BS, Linden M, Randolph TW.  2012.  Statistical Methods for Tissue Array Images - Algorithmic Scoring and Co-training.. The annals of applied statistics. 6(3):1280-1305. Abstract
Serrano, NA, Xu C, Liu Y, Wang P, Fan W, Upton MP, Houck JR, Lohavanichbutr P, Kao M, Zhao LP et al..  2012.  Integrative Analysis in Oral Squamous Cell Carcinoma Reveals DNA Copy Number-Associated miRNAs Dysregulating Target Genes.. Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery. Abstract
Lohavanichbutr, P, Houck J, Doody DR, Wang P, Mendez E, Futran N, Upton MP, Holsinger CF, Schwartz SM, Chen C.  2012.  Gene Expression in Uninvolved Oral Mucosa of OSCC Patients Facilitates Identification of Markers Predictive of OSCC Outcomes.. PloS one. 7(9):e46575. Abstract
Thu, KL, Vucic EA, Chari R, Zhang W, Lockwood WW, English JC, Fu R, Wang P, Feng Z, MacAulay CE et al..  2012.  Lung adenocarcinoma of never smokers and smokers harbor differential regions of genetic alteration and exhibit different levels of genomic instability.. PloS one. 7(3):e33003. Abstract
2011
Ivey, RG, Moore HD, Voytovich UJ, Thienes CP, Lorentzen TD, Pogosova-Agadjanyan EL, Frayo S, Izaguirre VK, Lundberg SJ, Hedin L et al..  2011.  Blood-based detection of radiation exposure in humans based on novel phospho-Smc1 ELISA.. Radiation research. 175(3):266-81. Abstract
Wang, P, Chao DL, Hsu L.  2011.  Learning oncogenic pathways from binary genomic instability data.. Biometrics. 67(1):164-73. Abstract
Whiteaker, JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ et al..  2011.  A targeted proteomics-based pipeline for verification of biomarkers in plasma.. Nature biotechnology. 29(7):625-34. Abstract
Schoenherr, RM, Kelly-Spratt KS, Lin C, Whiteaker JR, Liu T, Holzman T, Coleman I, Feng L-C, Lorentzen TD, Krasnoselsky AL et al..  2011.  Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer.. Proteomics. Clinical applications. 5(3-4):179-88. Abstract
2010
Kim, YH, Kwei KA, Girard L, Salari K, Kao J, Pacyna-Gengelbach M, Wang P, Hernandez-Boussard T, Gazdar AF, Petersen I et al..  2010.  Genomic and functional analysis identifies CRKL as an oncogene amplified in lung cancer.. Oncogene. 29(10):1421-30. Abstract
Tabb, DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham A-JL, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL et al..  2010.  Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.. Journal of proteome research. 9(2):761-76. Abstract
Paulovich, AG, Billheimer D, Ham A-JL, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.. Molecular & cellular proteomics : MCP. 9(2):242-54. Abstract
Rudnick, PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.. Molecular & cellular proteomics : MCP. 9(2):225-41. Abstract
Xu, C, Liu Y, Wang P, Fan W, Rue TC, Upton MP, Houck JR, Lohavanichbutr P, Doody DR, Futran ND et al..  2010.  Integrative analysis of DNA copy number and gene expression in metastatic oral squamous cell carcinoma identifies genes associated with poor survival.. Molecular cancer. 9:143. Abstract
Prentice, RL, Paczesny S, Aragaki A, Amon LM, Chen L, Pitteri SJ, McIntosh MW, Wang P, Buson Busald T, Hsia J et al..  2010.  Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling.. Genome medicine. 2(7):48. Abstract
Peng, J, Zhu J, Bergamaschi A, Han W, Noh D-Y, Pollack JR, Wang P.  2010.  Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer. The Annals of Applied Statistics. 4(1):53-77.
2009
Wang, P, Whiteaker JR, Paulovich AG.  2009.  The evolving role of mass spectrometry in cancer biomarker discovery.. Cancer biology & therapy. 8(12):1083-94. Abstract
Piening, BD, Wang P, Subramanian A, Paulovich AG.  2009.  A radiation-derived gene expression signature predicts clinical outcome for breast cancer patients.. Radiation research. 171(2):141-54. Abstract
Pitteri, SJ, Hanash SM, Aragaki A, Amon LM, Chen L, Busald Buson T, Paczesny S, Katayama H, Wang H, Johnson MM et al..  2009.  Postmenopausal estrogen and progestin effects on the serum proteome.. Genome medicine. 1(12):121. Abstract
2008
Kwei, KA, Bashyam MD, Kao J, Ratheesh R, Reddy EC, Kim YH, Montgomery K, Giacomini CP, Choi Y-L, Chatterjee S et al..  2008.  Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer.. PLoS genetics. 4(5):e1000081. Abstract
Xu, C, Houck JR, Fan W, Wang P, Chen Y, Upton M, Futran ND, Schwartz SM, Zhao LP, Chen C et al..  2008.  Simultaneous isolation of DNA and RNA from the same cell population obtained by laser capture microdissection for genome and transcriptome profiling.. The Journal of molecular diagnostics : JMD. 10(2):129-34. Abstract
Tibshirani, R, Wang P.  2008.  Spatial smoothing and hot spot detection for CGH data using the fused lasso.. Biostatistics (Oxford, England). 9(1):18-29. Abstract