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The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example.. Developmental biology. 340(2):170-8.. 2010.
Integration of 198 ChIP-seq Datasets Reveals Human cis-Regulatory Regions.. Journal of computational biology : a journal of computational molecular cell biology. 19(9):989-97.. 2012.
Network dynamics in the tumor microenvironment.. Seminars in cancer biology.. 2014.
Menu-driven cloud computing and resource sharing for R and Bioconductor.. Bioinformatics (Oxford, England). 27(16):2309-10.. 2011.
Modeling genomic regulatory networks with big data.. Trends in genetics : TIG.. 2014.
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