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Optimization of periprosthetic culture for diagnosis of Propionibacterium acnes prosthetic joint infection.. Journal of clinical microbiology. 49(7):2490-5.. 2011.
Gene loss and adaptation to hominids underlie the ancient origin of HIV-1.. Cell host & microbe. 14(1):85-92.. 2013.
The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples. Journal of the Royal Statistical Society: Series B (Statistical Methodology). 74(3):569-592.. 2012.
The Prognosis for Improvement in Comfort and Function After the Ream-and-Run Arthroplasty for Glenohumeral Arthritis: An Analysis of 176 Consecutive Cases.. The Journal of bone and joint surgery. American volume. 94(14):e1021-9.. 2012.
Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.. Journal of acquired immune deficiency syndromes (1999).. 2012.
Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family.. PLoS genetics. 8(6):e1002729.. 2012.
The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx.. Cell host & microbe. 11(2):194-204.. 2012.
Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials.. Algorithms for molecular biology : AMB. 7(1):14.. 2012.
constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints.. Journal of computational biology : a journal of computational molecular cell biology. 17(6):799-818.. 2010.
Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots.. Algorithms for molecular biology : AMB. 7(1):8.. 2012.
A format for phylogenetic placements.. PloS one. 7(2):e31009.. 2012.
nestly--a framework for running software with nested parameter choices and aggregating results.. Bioinformatics (Oxford, England). 29(3):387-8.. 2013.
The mean and variance of phylogenetic diversity under rarefaction.. Methods in ecology and evolution / British Ecological Society. 4(6):566-572.. 2013.
HIV-1 superinfection occurs less frequently than initial infection in a cohort of high-risk Kenyan women.. PLoS pathogens. 9(8):e1003593.. 2013.
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