Center-Authored Papers

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A
Aghaeepour, N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.  2013.  Critical assessment of automated flow cytometry data analysis techniques.. Nature methods. 10(3):228-38. Abstract
B
Bashashati, A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, Lo K, Gottardo R, Brinkman FSL, Connors JM et al..  2012.  B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.. American journal of clinical pathology. 137(5):805-14. Abstract
C
Caron, F, Doucet A, Gottardo R.  2012.  On-line changepoint detection and parameter estimation with application to genomic data. Statistics and Computing. 22(2):579-595.
Casazza, JP, Bowman KA, Adzaku S, Smith EC, Enama ME, Bailer RT, Price DA, Gostick E, Gordon IJ, Ambrozak DR et al..  2013.  Therapeutic Vaccination Expands and Improves the Function of the HIV-Specific Memory T-Cell Repertoire.. The Journal of infectious diseases. Abstract
D
Dominguez, MH, Chattopadhyay PK, Ma S, Lamoreaux L, McDavid A, Finak G, Gottardo R, Koup RA, Roederer M.  2013.  Highly multiplexed quantitation of gene expression on single cells.. Journal of immunological methods. 391(1-2):133-45. Abstract
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Finak, G, Perez J-M, Weng A, Gottardo R.  2010.  Optimizing transformations for automated, high throughput analysis of flow cytometry data.. BMC bioinformatics. 11:546. Abstract
Finak, G, Jiang W, Pardo J, Asare A, Gottardo R.  2012.  QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data.. BMC bioinformatics. 13(1):252. Abstract
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Huang, Y, Gottardo R.  2012.  Comparability and reproducibility of biomedical data.. Briefings in bioinformatics. Abstract
K
Karasavvas, N, Billings E, Rao M, Williams C, Zolla-Pazner S, Bailer RT, Koup RA, Madnote S, Arworn D, Shen X et al..  2012.  The Thai Phase III HIV Type 1 Vaccine Trial (RV144) Regimen Induces Antibodies That Target Conserved Regions Within the V2 Loop of gp120.. AIDS research and human retroviruses. 28(11):1444-57. Abstract
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Lo, K, Gottardo R.  2012.  Flexible mixture modeling via the multivariate t distribution with the Box-Cox transformation: an alternative to the skew-t distribution.. Statistics and computing. 22(1):33-52. Abstract
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Scott-Boyer, MP, Imholte GC, Tayeb A, Labbe A, Deschepper CF, Gottardo R.  2012.  An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping.. Statistical applications in genetics and molecular biology. 11(4) Abstract
Z
Zhang, X, Robertson G, Woo S, Hoffman BG, Gottardo R.  2012.  Probabilistic inference for nucleosome positioning with MNase-based or sonicated short-read data.. PloS one. 7(2):e32095. Abstract
Zolla-Pazner, S, Decamp AC, Cardozo T, Karasavvas N, Gottardo R, Williams C, Morris DE, Tomaras G, Rao M, Billings E et al..  2013.  Analysis of V2 antibody responses induced in vaccinees in the ALVAC/AIDSVAX HIV-1 vaccine efficacy trial.. PloS one. 8(1):e53629. Abstract